1.General Information

IP2 updated info:

• 5/7/20 Targeted Quant Analysis manual was updated. Users can quantify peptides without running a search engine. Click here for more info http://manual.integratedproteomics.com/1/en/topic/ta
• 4/15/20 DTASelect option to correct delta mass for FDR calculation (DMS)
• 4/1/20 peptide level n-term, c-term diff mod search option
• 3/1/20 spectral library search tool
• 2/20/20 batch DTASelect option was added
• 12/13/19 IP2 batch spectra upload manual page was updated. Click here for more info https://www.manula.com/manuals/ip2/ip2/1/en/topic/5-3-batch-spectra-upload
• 12/11/19 IP2 API development kit version 2 was released
• 12/9/19 ‘Use low fragment ions’ option in the search page was moved to advanced parameters box
• 11/13/19 New Census quant tool analyzes TMT data >10 times faster
• 11/04/19 Fast version of DTASelect was deployed
• 11/13/19 New Census quant tool analyzes TMT data >10 times faster
• 11/04/19 Fast version of DTASelect was deployed
• 10/28/19 split scan number param in batch search is added
• 9/3/19 TMT 16-plex support has been added
• 8/20/19 Thermal Proteome Profile (TPP) Temperature Range (TR) tool was added.
• 8/20/19 TMT re-filtering performance issue was fixed.
• 8/19/19 Spectrum level FDR was added to the search result page
• 8/11/19 Users can save parameters in a quantitative analysis.
• 8/11/19 Prolucid applies new high-resolution algorithm when users specify fragment mass tolerance equal to or less than 100 ppm.
• 8/11/19 Clustering Analysis Tool was added. Click here for more info
• 8/10/19 Peptide group option (-ug) in DTASelect filter.
• 5/17/19 Reactome pathway analysis tool was added.
• 4/2/19 Fractional analysis tool and its manual was updated.
• 3/21/19 Fractional data analysis tool was added.
• 2/26/19 isobaric quant analysis (e.g. TMT) updates progress bar in the job status page
• 2/22/19 Molecular weight and protein length are added to the protein-level identification page
• 2/20/19 Batch uploading page was changed from flash to javascript with upload validation check. The batch uploading tool is designed to upload multiple spectral files and create multiple experiments automatically
• 2/17/19 Kinase Enrichment Analysis with Phosphosites tool was added.
• 2/10/19 Unique peptide filtering was added to isobaric(e.g. TMT) pages
• 2/10/19 retention time was added to search result page
  click here for more
  

• 1.1 System Overview
• 1.2 3rd Party Software Integrated into the IP2
• 1.3 Points of Contact